Effect of a Single Amino Acid Change in MHC Class I Molecules on the Rate of Progression to AIDS
Xiaojiang Gao, Ph.D., George W. Nelson, Ph.D., Peter Karacki, B.A., Maureen P. Martin, M.D., John Phair, M.D., Richard Kaslow, M.D., James J. Goedert, M.D., Susan Buchbinder, M.D., Keith Hoots, M.D., David Vlahov, Ph.D., Stephen J. O'Brien, Ph.D., and Mary Carrington, Ph.D.
Background From studies of genetic polymorphisms and the rateof progression from human immunodeficiency virus type 1 (HIV-1)infection to the acquired immunodeficiency syndrome (AIDS),it appears that the strongest susceptibility is conferred bythe major-histocompatibility-complex (MHC) class I type HLA-B*35,Cw*04allele. However, cytotoxic T-lymphocyte responses have beenobserved against HIV-1 epitopes presented by HLA-B*3501, themost common HLA-B*35 subtype. We examined subtypes of HLA-B*35in five cohorts and analyzed the relation of structural differencesbetween HLA-B*35 subtypes to the risk of progression to AIDS.
Methods Genotyping of HLA class I loci was performed for 850patients who seroconverted and had known dates of HIV-1 infection.Survival analyses with respect to the rate of progression toAIDS were performed to identify the effects of closely relatedHLA-B*35 subtypes with different peptide-binding specificities.
Results HLA-B*35 subtypes were divided into two groups accordingto peptide-binding specificity: the HLA-B*35-PY group, whichconsists primarily of HLA-B*3501 and binds epitopes with prolinein position 2 and tyrosine in position 9; and the more broadlyreactive HLA-B*35-Px group, which also binds epitopes with prolinein position 2 but can bind several different amino acids (notincluding tyrosine) in position 9. The influence of HLA-B*35in accelerating progression to AIDS was completely attributableto HLA-B*35-Px alleles, some of which differ from HLA-B*35-PYalleles by only one amino acid residue.
Conclusions This analysis shows that, in patients with HIV-1infection, a single amino acid change in HLA molecules has asubstantial effect on the rate of progression to AIDS. The differentconsequences of HLA-B*35-PY and HLA-B*35-Px in terms of diseaseprogression highlight the importance of the epitope specificitiesof closely related class I molecules in the immune defense againstHIV-1.
Source Information
From the Intramural Research Support Program, Science Applications International Corporation Frederick and the National Cancer Institute, Frederick, Md. (X.G., G.W.N., M.P.M., M.C.); Johns Hopkins School of Medicine, Baltimore (P.K.); Northwestern University Medical School Comprehensive AIDS Center, Chicago (J.P.); the Department of Epidemiology, University of Alabama at Birmingham School of Public Health, Birmingham (R.K.); the Viral Epidemiology Branch, National Cancer Institute, Bethesda, Md. (J.J.G.); the San Francisco Department of Public Health, San Francisco (S.B.); the Gulf States Hemophilia Center, University of Texas Health Science Center, Houston (K.H.); Johns Hopkins School of Hygiene and Public Health, Baltimore (D.V.); and the Laboratory of Genomic Diversity, National Cancer Institute, Frederick, Md. (S.J.O.). This article is dedicated to the memory of Dr. Janis Giorgi, a longtime friend and colleague.
Address reprint requests to Dr. Carrington at P.O. Box B, NCI-FCRDC, Frederick, MD 21702, or at carringt{at}mail.ncifcrf.gov.
Geldmacher, C., Metzler, I. S., Tovanabutra, S., Asher, T. E., Gostick, E., Ambrozak, D. R., Petrovas, C., Schuetz, A., Ngwenyama, N., Kijak, G., Maboko, L., Hoelscher, M., McCutchan, F., Price, D. A., Douek, D. C., Koup, R. A.
(2009). Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response. Blood
114: 1553-1562
[Abstract][Full Text]
Duda, A., Lee-Turner, L., Fox, J., Robinson, N., Dustan, S., Kaye, S., Fryer, H., Carrington, M., McClure, M., Mclean, A. R., Fidler, S., Weber, J., Phillips, R. E., Frater, A. J., and the SPARTAC Trial Investigators,
(2009). HLA-Associated Clinical Progression Correlates with Epitope Reversion Rates in Early Human Immunodeficiency Virus Infection. J. Virol.
83: 1228-1239
[Abstract][Full Text]
Rao, X., Fontaine Costa, A. I. C. A., van Baarle, D., Kesmir, C.
(2009). A Comparative Study of HLA Binding Affinity and Ligand Diversity: Implications for Generating Immunodominant CD8+ T Cell Responses. J. Immunol.
182: 1526-1532
[Abstract][Full Text]
Escobar, H., Crockett, D. K., Reyes-Vargas, E., Baena, A., Rockwood, A. L., Jensen, P. E., Delgado, J. C.
(2008). Large Scale Mass Spectrometric Profiling of Peptides Eluted from HLA Molecules Reveals N-Terminal-Extended Peptide Motifs. J. Immunol.
181: 4874-4882
[Abstract][Full Text]
Narzi, D., Winkler, K., Saidowsky, J., Misselwitz, R., Ziegler, A., Bockmann, R. A., Alexiev, U.
(2008). Molecular Determinants of Major Histocompatibility Complex Class I Complex Stability: SHAPING ANTIGENIC FEATURES THROUGH SHORT AND LONG RANGE ELECTROSTATIC INTERACTIONS. J. Biol. Chem.
283: 23093-23103
[Abstract][Full Text]
Emu, B., Sinclair, E., Hatano, H., Ferre, A., Shacklett, B., Martin, J. N., McCune, J. M., Deeks, S. G.
(2008). HLA Class I-Restricted T-Cell Responses May Contribute to the Control of Human Immunodeficiency Virus Infection, but Such Responses Are Not Always Necessary for Long-Term Virus Control. J. Virol.
82: 5398-5407
[Abstract][Full Text]
Ueno, T., Motozono, C., Dohki, S., Mwimanzi, P., Rauch, S., Fackler, O. T., Oka, S., Takiguchi, M.
(2008). CTL-Mediated Selective Pressure Influences Dynamic Evolution and Pathogenic Functions of HIV-1 Nef. J. Immunol.
180: 1107-1116
[Abstract][Full Text]
Mathieu, A, Cauli, A, Fiorillo, M T, Sorrentino, R
(2008). HLA-B27 and ankylosing spondylitis geographic distribution versus malaria endemic: casual or causal liaison?. Ann Rheum Dis
67: 138-140
[Full Text]
Alter, G., Martin, M. P., Teigen, N., Carr, W. H., Suscovich, T. J., Schneidewind, A., Streeck, H., Waring, M., Meier, A., Brander, C., Lifson, J. D., Allen, T. M., Carrington, M., Altfeld, M.
(2007). Differential natural killer cell mediated inhibition of HIV-1 replication based on distinct KIR/HLA subtypes. JEM
204: 3027-3036
[Abstract][Full Text]
Navis, M., Schellens, I., van Baarle, D., Borghans, J., van Swieten, P., Miedema, F., Kootstra, N., Schuitemaker, H.
(2007). Viral Replication Capacity as a Correlate of HLA B57/B5801-Associated Nonprogressive HIV-1 Infection. J. Immunol.
179: 3133-3143
[Abstract][Full Text]
Streeck, H., Lichterfeld, M., Alter, G., Meier, A., Teigen, N., Yassine-Diab, B., Sidhu, H. K., Little, S., Kelleher, A., Routy, J.-P., Rosenberg, E. S., Sekaly, R.-P., Walker, B. D., Altfeld, M.
(2007). Recognition of a Defined Region within p24 Gag by CD8+ T Cells during Primary Human Immunodeficiency Virus Type 1 Infection in Individuals Expressing Protective HLA Class I Alleles. J. Virol.
81: 7725-7731
[Abstract][Full Text]
Kiryluk, K., Martino, J., Gharavi, A. G.
(2007). Genetic Susceptibility, HIV Infection, and the Kidney. CJASN
2: S25-S35
[Abstract][Full Text]
Frater, A. J., Brown, H., Oxenius, A., Gunthard, H. F., Hirschel, B., Robinson, N., Leslie, A. J., Payne, R., Crawford, H., Prendergast, A., Brander, C., Kiepiela, P., Walker, B. D., Goulder, P. J. R., McLean, A., Phillips, R. E., and the Swiss HIV-Cohort Study,
(2007). Effective T-Cell Responses Select Human Immunodeficiency Virus Mutants and Slow Disease Progression. J. Virol.
81: 6742-6751
[Abstract][Full Text]
Honeyborne, I., Prendergast, A., Pereyra, F., Leslie, A., Crawford, H., Payne, R., Reddy, S., Bishop, K., Moodley, E., Nair, K., van der Stok, M., McCarthy, N., Rousseau, C. M., Addo, M., Mullins, J. I., Brander, C., Kiepiela, P., Walker, B. D., Goulder, P. J. R.
(2007). Control of Human Immunodeficiency Virus Type 1 Is Associated with HLA-B*13 and Targeting of Multiple Gag-Specific CD8+ T-Cell Epitopes. J. Virol.
81: 3667-3672
[Abstract][Full Text]
Mealey, R. H., Lee, J.-H., Leib, S. R., Littke, M. H., McGuire, T. C.
(2006). A Single Amino Acid Difference within the {alpha}-2 Domain of Two Naturally Occurring Equine MHC Class I Molecules Alters the Recognition of Gag and Rev Epitopes by Equine Infectious Anemia Virus-Specific CTL. J. Immunol.
177: 7377-7390
[Abstract][Full Text]
Leslie, A., Price, D. A., Mkhize, P., Bishop, K., Rathod, A., Day, C., Crawford, H., Honeyborne, I., Asher, T. E., Luzzi, G., Edwards, A., Rosseau, C. M., Mullins, J. I., Tudor-Williams, G., Novelli, V., Brander, C., Douek, D. C., Kiepiela, P., Walker, B. D., Goulder, P. J. R.
(2006). Differential Selection Pressure Exerted on HIV by CTL Targeting Identical Epitopes but Restricted by Distinct HLA Alleles from the Same HLA Supertype. J. Immunol.
177: 4699-4708
[Abstract][Full Text]
Turnbull, E. L., Lopes, A. R., Jones, N. A., Cornforth, D., Newton, P., Aldam, D., Pellegrino, P., Turner, J., Williams, I., Wilson, C. M., Goepfert, P. A., Maini, M. K., Borrow, P.
(2006). HIV-1 Epitope-Specific CD8+ T Cell Responses Strongly Associated with Delayed Disease Progression Cross-Recognize Epitope Variants Efficiently. J. Immunol.
176: 6130-6146
[Abstract][Full Text]
Milicic, A., Price, D. A., Zimbwa, P., Booth, B. L., Brown, H. L., Easterbrook, P. J., Olsen, K., Robinson, N., Gileadi, U., Sewell, A. K., Cerundolo, V., Phillips, R. E.
(2005). CD8+ T Cell Epitope-Flanking Mutations Disrupt Proteasomal Processing of HIV-1 Nef. J. Immunol.
175: 4618-4626
[Abstract][Full Text]
Bernardin, F., Kong, D., Peddada, L., Baxter-Lowe, L. A., Delwart, E.
(2005). Human Immunodeficiency Virus Mutations during the First Month of Infection Are Preferentially Found in Known Cytotoxic T-Lymphocyte Epitopes. J. Virol.
79: 11523-11528
[Abstract][Full Text]
Stewart-Jones, G. B. E., Gillespie, G., Overton, I. M., Kaul, R., Roche, P., McMichael, A. J., Rowland-Jones, S., Jones, E. Y.
(2005). Structures of Three HIV-1 HLA-B*5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Nonprogression. J. Immunol.
175: 2459-2468
[Abstract][Full Text]
Huang, S., Gilfillan, S., Cella, M., Miley, M. J., Lantz, O., Lybarger, L., Fremont, D. H., Hansen, T. H.
(2005). Evidence for MR1 Antigen Presentation to Mucosal-associated Invariant T Cells. J. Biol. Chem.
280: 21183-21193
[Abstract][Full Text]
Fiorillo, M. T., Ruckert, C., Hulsmeyer, M., Sorrentino, R., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.
(2005). Allele-dependent Similarity between Viral and Self-peptide Presentation by HLA-B27 Subtypes. J. Biol. Chem.
280: 2962-2971
[Abstract][Full Text]
Peyerl, F. W., Bazick, H. S., Newberg, M. H., Barouch, D. H., Sodroski, J., Letvin, N. L.
(2004). Fitness Costs Limit Viral Escape from Cytotoxic T Lymphocytes at a Structurally Constrained Epitope. J. Virol.
78: 13901-13910
[Abstract][Full Text]
An, P., Bleiber, G., Duggal, P., Nelson, G., May, M., Mangeat, B., Alobwede, I., Trono, D., Vlahov, D., Donfield, S., Goedert, J. J., Phair, J., Buchbinder, S., O'Brien, S. J., Telenti, A., Winkler, C. A.
(2004). APOBEC3G Genetic Variants and Their Influence on the Progression to AIDS. J. Virol.
78: 11070-11076
[Abstract][Full Text]
Scherer, A., Frater, J., Oxenius, A., Agudelo, J., Price, D. A., Gunthard, H. F., Barnardo, M., Perrin, L., Hirschel, B., Phillips, R. E., McLean, A. R., The Swiss HIV Cohort Study,
(2004). From the Cover: Quantifiable cytotoxic T lymphocyte responses and HLA-related risk of progression to AIDS. Proc. Natl. Acad. Sci. USA
101: 12266-12270
[Abstract][Full Text]
Pohlmann, T., Bockmann, R. A., Grubmuller, H., Uchanska-Ziegler, B., Ziegler, A., Alexiev, U.
(2004). Differential Peptide Dynamics Is Linked to Major Histocompatibility Complex Polymorphism. J. Biol. Chem.
279: 28197-28201
[Abstract][Full Text]
Winkler, C., An, P., O'Brien, S. J.
(2004). Patterns of ethnic diversity among the genes that influence AIDS. Hum Mol Genet
13: R9-19
[Abstract][Full Text]
Kilpatrick, E. D., Terajima, M., Koster, F. T., Catalina, M. D., Cruz, J., Ennis, F. A.
(2004). Role of Specific CD8+ T Cells in the Severity of a Fulminant Zoonotic Viral Hemorrhagic Fever, Hantavirus Pulmonary Syndrome. J. Immunol.
172: 3297-3304
[Abstract][Full Text]
Hulsmeyer, M., Fiorillo, M. T., Bettosini, F., Sorrentino, R., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.
(2004). Dual, HLA-B27 Subtype-dependent Conformation of a Self-peptide. JEM
199: 271-281
[Abstract][Full Text]
Lafont, B. A. P., Buckler-White, A., Plishka, R., Buckler, C., Martin, M. A.
(2003). Characterization of Pig-Tailed Macaque Classical MHC Class I Genes: Implications for MHC Evolution and Antigen Presentation in Macaques. J. Immunol.
171: 875-885
[Abstract][Full Text]
Hoppe, C., Klitz, W., Noble, J., Vigil, L., Vichinsky, E., Styles, L.
(2003). Distinct HLA associations by stroke subtype in children with sickle cell anemia. Blood
101: 2865-2869
[Abstract][Full Text]
Jaatinen, T., Lahti, M., Ruuskanen, O., Kinos, R., Truedsson, L., Lahesmaa, R., Lokki, M.-L.
(2003). Total C4B Deficiency Due to Gene Deletion and Gene Conversion in a Patient with Severe Infections. CVI
10: 195-201
[Abstract][Full Text]
Flores-Villanueva, P. O., Hendel, H., Caillat-Zucman, S., Rappaport, J., Burgos-Tiburcio, A., Bertin-Maghit, S., Ruiz-Morales, J. A., Teran, M. E., Rodriguez-Tafur, J., Zagury, J.-F.
(2003). Associations of MHC Ancestral Haplotypes with Resistance/Susceptibility to AIDS Disease Development. J. Immunol.
170: 1925-1929
[Abstract][Full Text]
Zhang, Z.-Q., Fu, T.-M., Casimiro, D. R., Davies, M.-E., Liang, X., Schleif, W. A., Handt, L., Tussey, L., Chen, M., Tang, A., Wilson, K. A., Trigona, W. L., Freed, D. C., Tan, C. Y., Horton, M., Emini, E. A., Shiver, J. W.
(2002). Mamu-A*01 Allele-Mediated Attenuation of Disease Progression in Simian-Human Immunodeficiency Virus Infection. J. Virol.
76: 12845-12854
[Abstract][Full Text]
Jin, X., Gao, X., Ramanathan, M. Jr., Deschenes, G. R., Nelson, G. W., O'Brien, S. J., Goedert, J. J., Ho, D. D., O'Brien, T. R., Carrington, M.
(2002). Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+-T-Cell Responses for Groups of HIV-1-Infected Individuals with Different HLA-B*35 Genotypes. J. Virol.
76: 12603-12610
[Abstract][Full Text]
Ueno, T., Tomiyama, H., Takiguchi, M.
(2002). Single T Cell Receptor-Mediated Recognition of an Identical HIV-Derived Peptide Presented by Multiple HLA Class I Molecules. J. Immunol.
169: 4961-4969
[Abstract][Full Text]
Martin, M. P., Nelson, G., Lee, J.-H., Pellett, F., Gao, X., Wade, J., Wilson, M. J., Trowsdale, J., Gladman, D., Carrington, M.
(2002). Cutting Edge: Susceptibility to Psoriatic Arthritis: Influence of Activating Killer Ig-Like Receptor Genes in the Absence of Specific HLA-C Alleles. J. Immunol.
169: 2818-2822
[Abstract][Full Text]
Muhl, T., Krawczak, M., ten Haaft, P., Hunsmann, G., Sauermann, U.
(2002). MHC Class I Alleles Influence Set-Point Viral Load and Survival Time in Simian Immunodeficiency Virus-Infected Rhesus Monkeys. J. Immunol.
169: 3438-3446
[Abstract][Full Text]
An, P., Nelson, G. W., Wang, L., Donfield, S., Goedert, J. J., Phair, J., Vlahov, D., Buchbinder, S., Farrar, W. L., Modi, W., O'Brien, S. J., Winkler, C. A.
(2002). Modulating influence on HIV/AIDS by interacting RANTES gene variants. Proc. Natl. Acad. Sci. USA
99: 10002-10007
[Abstract][Full Text]
Tang, J., Tang, S., Lobashevsky, E., Myracle, A. D., Fideli, U., Aldrovandi, G., Allen, S., Musonda, R., Kaslow, R. A.
(2002). Favorable and Unfavorable HLA Class I Alleles and Haplotypes in Zambians Predominantly Infected with Clade C Human Immunodeficiency Virus Type 1. J. Virol.
76: 8276-8284
[Abstract][Full Text]
Tomiyama, H., Akari, H., Adachi, A., Takiguchi, M.
(2002). Different Effects of Nef-Mediated HLA Class I Down-Regulation on Human Immunodeficiency Virus Type 1-Specific CD8+ T-Cell Cytolytic Activity and Cytokine Production. J. Virol.
76: 7535-7543
[Abstract][Full Text]
Sutton, I, Neuberger, J
(2002). Primary biliary cirrhosis: seeking the silent partner of autoimmunity. Gut
50: 743-746
[Abstract][Full Text]
Thio, C. L., Gao, X., Goedert, J. J., Vlahov, D., Nelson, K. E., Hilgartner, M. W., O'Brien, S. J., Karacki, P., Astemborski, J., Carrington, M., Thomas, D. L.
(2002). HLA-Cw*04 and Hepatitis C Virus Persistence. J. Virol.
76: 4792-4797
[Abstract][Full Text]
Lauer, G. M., Nguyen, T. N., Day, C. L., Robbins, G. K., Flynn, T., McGowan, K., Rosenberg, E. S., Lucas, M., Klenerman, P., Chung, R. T., Walker, B. D.
(2002). Human Immunodeficiency Virus Type 1-Hepatitis C Virus Coinfection: Intraindividual Comparison of Cellular Immune Responses against Two Persistent Viruses. J. Virol.
76: 2817-2826
[Abstract][Full Text]
Cainelli, F., Concia, E., Vento, S., Carrington, M., Gao, X., O'Brien, S.
(2001). MHC Class I Molecules and Progression to AIDS. NEJM
345: 924-925
[Full Text]
Kaslow, R. A., Rivers, C., Tang, J., Bender, T. J., Goepfert, P. A., El Habib, R., Weinhold, K., Mulligan, M. J., the NIAID Aids Vaccine Evaluation Group,
(2001). Polymorphisms in HLA Class I Genes Associated with both Favorable Prognosis of Human Immunodeficiency Virus (HIV) Type 1 Infection and Positive Cytotoxic T-Lymphocyte Responses to ALVAC-HIV Recombinant Canarypox Vaccines. J. Virol.
75: 8681-8689
[Abstract][Full Text]
Goulder, P. J., Jeena, P., Tudor-Williams, G., Burchett, S.
(2001). Paediatric HIV infection: correlates of protective immunity and global perspectives in prevention and management. Br Med Bull
58: 89-108
[Abstract][Full Text]
(2001). More on Genetic Susceptibility to AIDS. AIDS Clin Care
2001: 4-4
[Full Text]