A Gene-Expression Signature as a Predictor of Survival in Breast Cancer
Marc J. van de Vijver, M.D., Ph.D., Yudong D. He, Ph.D., Laura J. van 't Veer, Ph.D., Hongyue Dai, Ph.D., Augustinus A.M. Hart, M.Sc., Dorien W. Voskuil, Ph.D., George J. Schreiber, M.Sc., Johannes L. Peterse, M.D., Chris Roberts, Ph.D., Matthew J. Marton, Ph.D., Mark Parrish, Douwe Atsma, Anke Witteveen, Annuska Glas, Ph.D., Leonie Delahaye, Tony van der Velde, Harry Bartelink, M.D., Ph.D., Sjoerd Rodenhuis, M.D., Ph.D., Emiel T. Rutgers, M.D., Ph.D., Stephen H. Friend, M.D., Ph.D., and René Bernards, Ph.D.
Background A more accurate means of prognostication in breastcancer will improve the selection of patients for adjuvant systemictherapy.
Methods Using microarray analysis to evaluate our previouslyestablished 70-gene prognosis profile, we classified a seriesof 295 consecutive patients with primary breast carcinomas ashaving a gene-expression signature associated with either apoor prognosis or a good prognosis. All patients had stage Ior II breast cancer and were younger than 53 years old; 151had lymph-nodenegative disease, and 144 had lymph-nodepositivedisease. We evaluated the predictive power of the prognosisprofile using univariable and multivariable statistical analyses.
Conclusions The gene-expression profile we studied is a morepowerful predictor of the outcome of disease in young patientswith breast cancer than standard systems based on clinical andhistologic criteria.
Source Information
From the Divisions of Diagnostic Oncology (M.J.V., L.J.V., D.W.V., J.L.P., D.A., A.W., A.G., L.D.), Radiotherapy (A.A.M.H., H.B.), Medical Oncology (S.R.), Biometrics (T.V.), Surgical Oncology (E.T.R.), and Molecular Carcinogenesis (R.B.), Netherlands Cancer Institute, Amsterdam; the Center for Biomedical Genetics, Amsterdam (R.B.); and Rosetta Inpharmatics, Kirkland, Wash. (Y.D.H., H.D., G.J.S., C.R., M.J.M., M.P., S.H.F.). Drs. van de Vijver, He, and van 't Veer contributed equally to this article.
Address reprint requests to Dr. Bernards at the Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands, or at r.bernards{at}nki.nl.
Gene-Expression Signatures in Breast Cancer
Helmbold P., Haerting J., Kölbl H., Kopans D. B., Kunkler I. H., Ransohoff D. F., van de Vijver M. J., He Y. D., van 't Veer L. J., Bernards R.
Extract |
Full Text |
PDF
N Engl J Med 2003;
348:1715-1717, Apr 24, 2003.
Correspondence
This article has been cited by other articles:
Wittner, B. S., Sgroi, D. C., Ryan, P. D., Bruinsma, T. J., Glas, A. M., Male, A., Dahiya, S., Habin, K., Bernards, R., Haber, D. A., Van't Veer, L. J., Ramaswamy, S.
(2008). Analysis of the MammaPrint Breast Cancer Assay in a Predominantly Postmenopausal Cohort. Clin. Cancer Res.
14: 2988-2993
[Abstract][Full Text]
Barnett, D. H., Sheng, S., Howe Charn, T., Waheed, A., Sly, W. S., Lin, C.-Y., Liu, E. T., Katzenellenbogen, B. S.
(2008). Estrogen Receptor Regulation of Carbonic Anhydrase XII through a Distal Enhancer in Breast Cancer. Cancer Res.
68: 3505-3515
[Abstract][Full Text]
Russom, A., Sethu, P., Irimia, D., Mindrinos, M. N., Calvano, S. E., Garcia, I., Finnerty, C., Tannahill, C., Abouhamze, A., Wilhelmy, J., Lopez, M. C., Baker, H. V., Herndon, D. N., Lowry, S. F., Maier, R. V., Davis, R. W., Moldawer, L. L., Tompkins, R. G., Toner, M., the Inflammation and Host Response to Injury Large,
(2008). Microfluidic Leukocyte Isolation for Gene Expression Analysis in Critically Ill Hospitalized Patients. Clin. Chem.
54: 891-900
[Abstract][Full Text]
Korsching, E, Jeffrey, S S, Meinerz, W, Decker, T, Boecker, W, Buerger, H
(2008). Basal carcinoma of the breast revisited: an old entity with new interpretations. J. Clin. Pathol.
61: 553-560
[Abstract][Full Text]
Crawford, N. P. S., Alsarraj, J., Lukes, L., Walker, R. C., Officewala, J. S., Yang, H. H., Lee, M. P., Ozato, K., Hunter, K. W.
(2008). Bromodomain 4 activation predicts breast cancer survival. Proc. Natl. Acad. Sci. USA
105: 6380-6385
[Abstract][Full Text]
Cardoso, F., Saghatchian, M., Thompson, A., Rutgers, E., for the TRANSBIG Consortium Steering Committee,
(2008). Inconsistent Criteria Used in American Society of Clinical Oncology 2007 Update of Recommendations for the Use of Tumor Markers in Breast Cancer. JCO
26: 2058-2059
[Full Text]
Lin, N. U., Winer, E. P.
(2008). Optimizing Endocrine Therapy for Estrogen Receptor-Positive Breast Cancer: Treating the Right Patients for the Right Length of Time. JCO
26: 1919-1921
[Full Text]
Jimeno, A., Tan, A. C., Coffa, J., Rajeshkumar, N.V., Kulesza, P., Rubio-Viqueira, B., Wheelhouse, J., Diosdado, B., Messersmith, W. A., Iacobuzio-Donahue, C., Maitra, A., Varella-Garcia, M., Hirsch, F. R., Meijer, G. A., Hidalgo, M.
(2008). Coordinated Epidermal Growth Factor Receptor Pathway Gene Overexpression Predicts Epidermal Growth Factor Receptor Inhibitor Sensitivity in Pancreatic Cancer. Cancer Res.
68: 2841-2849
[Abstract][Full Text]
Huang, C.-C., Bredel, M.
(2008). Use of Gene Signatures to Improve Risk Estimation in Cancer. JAMA
299: 1605-1606
[Full Text]
Le Page, C., Ouellet, V., Quinn, M. C.J., Tonin, P. N., Provencher, D. M., Mes-Masson, A.-M.
(2008). BTF4/BTNA3.2 and GCS as Candidate mRNA Prognostic Markers in Epithelial Ovarian Cancer. Cancer Epidemiol. Biomarkers Prev.
17: 913-920
[Abstract][Full Text]
Dairkee, S. H., Seok, J., Champion, S., Sayeed, A., Mindrinos, M., Xiao, W., Davis, R. W., Goodson, W. H.
(2008). Bisphenol A Induces a Profile of Tumor Aggressiveness in High-Risk Cells from Breast Cancer Patients. Cancer Res.
68: 2076-2080
[Abstract][Full Text]
Cai, T., Cheng, S.
(2008). Robust combination of multiple diagnostic tests for classifying censored event times. Biostatistics
9: 216-233
[Abstract][Full Text]
Park, B.-W., Oh, J.-W., Kim, J.-H., Park, S. H., Kim, K.-S., Kim, J. H., Lee, K. S.
(2008). Preoperative CA 15-3 and CEA serum levels as predictor for breast cancer outcomes. Ann Oncol
19: 675-681
[Abstract][Full Text]
Jacob, J., Jentsch, M., Kostka, D., Bentink, S., Spang, R.
(2008). Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs. Bioinformatics
24: 995-1001
[Abstract][Full Text]
Pusztai, L.
(2008). Current Status of Prognostic Profiling in Breast Cancer. The Oncologist
13: 350-360
[Abstract][Full Text]
Bear, H. D.
(2008). Measuring Circulating Tumor Cells As a Surrogate End Point for Adjuvant Therapy of Breast Cancer: What Do They Mean and What Should We Do About Them?. JCO
26: 1195-1197
[Full Text]
Yulug, I. G., Gur-Dedeoglu, B.
(2008). Functional genomics in translational cancer research: focus on breast cancer. Brief Funct Genomic Proteomic
0: eln009v1-eln009
[Abstract][Full Text]
Marchionni, L., Wilson, R. F., Wolff, A. C., Marinopoulos, S., Parmigiani, G., Bass, E. B., Goodman, S. N.
(2008). Systematic Review: Gene Expression Profiling Assays in Early-Stage Breast Cancer. ANN INTERN MED
148: 358-369
[Abstract][Full Text]
Camps, C., Buffa, F. M., Colella, S., Moore, J., Sotiriou, C., Sheldon, H., Harris, A. L., Gleadle, J. M., Ragoussis, J.
(2008). hsa-miR-210 Is Induced by Hypoxia and Is an Independent Prognostic Factor in Breast Cancer. Clin. Cancer Res.
14: 1340-1348
[Abstract][Full Text]
Goeman, J. J., Mansmann, U.
(2008). Multiple testing on the directed acyclic graph of gene ontology. Bioinformatics
24: 537-544
[Abstract][Full Text]
Rutgers, E. J.T.
(2008). Sentinel Node Biopsy: Interpretation and Management of Patients With Immunohistochemistry-Positive Sentinel Nodes and Those With Micrometastases. JCO
26: 698-702
[Abstract][Full Text]
Sparano, J. A., Paik, S.
(2008). Development of the 21-Gene Assay and Its Application in Clinical Practice and Clinical Trials. JCO
26: 721-728
[Abstract][Full Text]
Cardoso, F., Van't Veer, L., Rutgers, E., Loi, S., Mook, S., Piccart-Gebhart, M. J.
(2008). Clinical Application of the 70-Gene Profile: The MINDACT Trial. JCO
26: 729-735
[Abstract][Full Text]
Laxman, B., Morris, D. S., Yu, J., Siddiqui, J., Cao, J., Mehra, R., Lonigro, R. J., Tsodikov, A., Wei, J. T., Tomlins, S. A., Chinnaiyan, A. M.
(2008). A First-Generation Multiplex Biomarker Analysis of Urine for the Early Detection of Prostate Cancer. Cancer Res.
68: 645-649
[Abstract][Full Text]
Finetti, P., Cervera, N., Charafe-Jauffret, E., Chabannon, C., Charpin, C., Chaffanet, M., Jacquemier, J., Viens, P., Birnbaum, D., Bertucci, F.
(2008). Sixteen-Kinase Gene Expression Identifies Luminal Breast Cancers with Poor Prognosis. Cancer Res.
68: 767-776
[Abstract][Full Text]
Buhimschi, I. A., Zambrano, E., Pettker, C. M., Bahtiyar, M. O., Paidas, M., Rosenberg, V. A., Thung, S., Salafia, C. M., Buhimschi, C. S.
(2008). Using Proteomic Analysis of the Human Amniotic Fluid to Identify Histologic Chorioamnionitis. Obstet Gynecol
111: 403-412
[Abstract][Full Text]
Cho, R. W., Wang, X., Diehn, M., Shedden, K., Chen, G. Y., Sherlock, G., Gurney, A., Lewicki, J., Clarke, M. F.
(2008). Isolation and Molecular Characterization of Cancer Stem Cells in MMTV-Wnt-1 Murine Breast Tumors. Stem Cells
26: 364-371
[Abstract][Full Text]
Wong, D. J., Nuyten, D. S.A., Regev, A., Lin, M., Adler, A. S., Segal, E., van de Vijver, M. J., Chang, H. Y.
(2008). Revealing Targeted Therapy for Human Cancer by Gene Module Maps. Cancer Res.
68: 369-378
[Abstract][Full Text]
Dobbe, E., Gurney, K., Kiekow, S., Lafferty, J. S., Kolesar, J. M.
(2008). Gene-expression assays: New tools to individualize treatment of early-stage breast cancer. Am J Health Syst Pharm
65: 23-28
[Abstract][Full Text]
Fatouros, M., Baltoyiannis, G., Roukos, D. H.
(2008). The Predominant Role of Surgery in the Prevention and New Trends in the Surgical Treatment of Women With BRCA1/2 Mutations. Ann. Surg. Oncol.
15: 21-33
[Abstract][Full Text]
Adelaide, J., Finetti, P., Bekhouche, I., Repellini, L., Geneix, J., Sircoulomb, F., Charafe-Jauffret, E., Cervera, N., Desplans, J., Parzy, D., Schoenmakers, E., Viens, P., Jacquemier, J., Birnbaum, D., Bertucci, F., Chaffanet, M.
(2007). Integrated Profiling of Basal and Luminal Breast Cancers. Cancer Res.
67: 11565-11575
[Abstract][Full Text]
LEVINE, A. J., HU, W., FENG, Z., GIL, G.
(2007). Reconstructing Signal Transduction Pathways: Challenges and Opportunities. Ann. N. Y. Acad. Sci.
1115: 32-50
[Abstract][Full Text]
Wu, M., Soler, D. R., Abba, M. C., Nunez, M. I., Baer, R., Hatzis, C., Llombart-Cussac, A., Llombart-Bosch, A., Aldaz, C. M.
(2007). CtIP Silencing as a Novel Mechanism of Tamoxifen Resistance in Breast Cancer. Mol Cancer Res
5: 1285-1295
[Abstract][Full Text]
Lusa, L., McShane, L. M., Reid, J. F., De Cecco, L., Ambrogi, F., Biganzoli, E., Gariboldi, M., Pierotti, M. A.
(2007). Challenges in Projecting Clustering Results Across Gene Expression Profiling Datasets. JNCI J Natl Cancer Inst
99: 1715-1723
[Abstract][Full Text]
Ignatiadis, M., Xenidis, N., Perraki, M., Apostolaki, S., Politaki, E., Kafousi, M., Stathopoulos, E. N., Stathopoulou, A., Lianidou, E., Chlouverakis, G., Sotiriou, C., Georgoulias, V., Mavroudis, D.
(2007). Different Prognostic Value of Cytokeratin-19 mRNA Positive Circulating Tumor Cells According to Estrogen Receptor and HER2 Status in Early-Stage Breast Cancer. JCO
25: 5194-5202
[Abstract][Full Text]
Harris, L., Fritsche, H., Mennel, R., Norton, L., Ravdin, P., Taube, S., Somerfield, M. R., Hayes, D. F., Bast, R. C. Jr
(2007). American Society of Clinical Oncology 2007 Update of Recommendations for the Use of Tumor Markers in Breast Cancer. JCO
25: 5287-5312
[Abstract][Full Text]
Yu, J., Yu, J., Rhodes, D. R., Tomlins, S. A., Cao, X., Chen, G., Mehra, R., Wang, X., Ghosh, D., Shah, R. B., Varambally, S., Pienta, K. J., Chinnaiyan, A. M.
(2007). A Polycomb Repression Signature in Metastatic Prostate Cancer Predicts Cancer Outcome. Cancer Res.
67: 10657-10663
[Abstract][Full Text]
Alexe, G., Dalgin, G. S., Scanfeld, D., Tamayo, P., Mesirov, J. P., DeLisi, C., Harris, L., Barnard, N., Martel, M., Levine, A. J., Ganesan, S., Bhanot, G.
(2007). High Expression of Lymphocyte-Associated Genes in Node-Negative HER2+ Breast Cancers Correlates with Lower Recurrence Rates. Cancer Res.
67: 10669-10676
[Abstract][Full Text]
MOREAU, J., ANDERSON, K. M., MAUNEY, J. R., KAPLAN, D., ROSENBLATT, M.
(2007). Studies of Osteotropism on Both Sides of the Breast Cancer Bone Interaction. Ann. N. Y. Acad. Sci.
1117: 328-344
[Abstract][Full Text]
Garman, K. S., Nevins, J. R., Potti, A.
(2007). Genomic strategies for personalized cancer therapy. Hum Mol Genet
16: R226-R232
[Abstract][Full Text]
Tozlu-Kara, S, Roux, V, Andrieu, C, Vendrell, J, Vacher, S, Lazar, V, Spyratos, F, Tubiana-Hulin, M, Cohen, P, Dessen, P, Lidereau, R, Bieche, I
(2007). Oligonucleotide microarray analysis of estrogen receptor {alpha}-positive postmenopausal breast carcinomas: identification of HRPAP20 and TIMELESS as outstanding candidate markers to predict the response to tamoxifen. J Mol Endocrinol
39: 305-318
[Abstract][Full Text]
Hsu, D. S., Balakumaran, B. S., Acharya, C. R., Vlahovic, V., Walters, K. S., Garman, K., Anders, C., Riedel, R. F., Lancaster, J., Harpole, D., Dressman, H. K., Nevins, J. R., Febbo, P. G., Potti, A.
(2007). Pharmacogenomic Strategies Provide a Rational Approach to the Treatment of Cisplatin-Resistant Patients With Advanced Cancer. JCO
25: 4350-4357
[Abstract][Full Text]
Briasoulis, E., Fatouros, M., Roukos, D. H.
(2007). Level I Evidence in Support of Perioperative Chemotherapy for Operable Gastric Cancer: Sufficient for Wide Clinical Use?. Ann. Surg. Oncol.
14: 2691-2695
[Full Text]
Rose, A. A.N., Pepin, F., Russo, C., Abou Khalil, J. E., Hallett, M., Siegel, P. M.
(2007). Osteoactivin Promotes Breast Cancer Metastasis to Bone. Mol Cancer Res
5: 1001-1014
[Abstract][Full Text]
Mimeault, M., Batra, S. K.
(2007). Interplay of distinct growth factors during epithelial mesenchymal transition of cancer progenitor cells and molecular targeting as novel cancer therapies. Ann Oncol
18: 1605-1619
[Abstract][Full Text]
Thomassen, M., Tan, Q., Eiriksdottir, F., Bak, M., Cold, S., Kruse, T. A.
(2007). Comparison of Gene Sets for Expression Profiling: Prediction of Metastasis from Low-Malignant Breast Cancer. Clin. Cancer Res.
13: 5355-5360
[Abstract][Full Text]
Abba, M. C., Sun, H., Hawkins, K. A., Drake, J. A., Hu, Y., Nunez, M. I., Gaddis, S., Shi, T., Horvath, S., Sahin, A., Aldaz, C. M.
(2007). Breast Cancer Molecular Signatures as Determined by SAGE: Correlation with Lymph Node Status. Mol Cancer Res
5: 881-890
[Abstract][Full Text]
Nakamura, T., Kuwai, T., Kitadai, Y., Sasaki, T., Fan, D., Coombes, K. R., Kim, S.-J., Fidler, I. J.
(2007). Zonal Heterogeneity for Gene Expression in Human Pancreatic Carcinoma. Cancer Res.
67: 7597-7604
[Abstract][Full Text]
Mendes-Ferreira, A., del Olmo, M., Garcia-Martinez, J., Jimenez-Marti, E., Leao, C., Mendes-Faia, A., Perez-Ortin, J. E.
(2007). Saccharomyces cerevisiae Signature Genes for Predicting Nitrogen Deficiency during Alcoholic Fermentation. Appl. Environ. Microbiol.
73: 5363-5369
[Abstract][Full Text]
Bovelstad, H.M., Nygard, S., Storvold, H.L., Aldrin, M., Borgan, O., Frigessi, A., Lingjaerde, O.C.
(2007). Predicting survival from microarray data a comparative study. Bioinformatics
23: 2080-2087
[Abstract][Full Text]
Lonning, P., Knappskog, S, Staalesen, V, Chrisanthar, R, Lillehaug, J.
(2007). Breast cancer prognostication and prediction in the postgenomic era. Ann Oncol
18: 1293-1306
[Abstract][Full Text]
Pollack, J. R.
(2007). A Perspective on DNA Microarrays in Pathology Research and Practice. Am. J. Pathol.
171: 375-385
[Abstract][Full Text]
Wong, H. R., Shanley, T. P., Sakthivel, B., Cvijanovich, N., Lin, R., Allen, G. L., Thomas, N. J., Doctor, A., Kalyanaraman, M., Tofil, N. M., Penfil, S., Monaco, M., Tagavilla, M. A., Odoms, K., Dunsmore, K., Barnes, M., Aronow, B. J., for the Genomics of Pediatric SIRS/Septic Shock In,
(2007). Genome-level expression profiles in pediatric septic shock indicate a role for altered zinc homeostasis in poor outcome. Physiol. Genomics
30: 146-155
[Abstract][Full Text]
Naderi, A., Teschendorff, A. E., Beigel, J., Cariati, M., Ellis, I. O., Brenton, J. D., Caldas, C.
(2007). BEX2 Is Overexpressed in a Subset of Primary Breast Cancers and Mediates Nerve Growth Factor/Nuclear Factor-{kappa}B Inhibition of Apoptosis in Breast Cancer Cell Lines. Cancer Res.
67: 6725-6736
[Abstract][Full Text]
Loberg, R. D., Bradley, D. A., Tomlins, S. A., Chinnaiyan, A. M., Pienta, K. J.
(2007). The Lethal Phenotype of Cancer: The Molecular Basis of Death Due to Malignancy. CA Cancer J Clin
57: 225-241
[Abstract][Full Text]
Trauernicht, A. M., Kim, S. J., Kim, N. H., Boyer, T. G.
(2007). Modulation of Estrogen Receptor {alpha} Protein Level and Survival Function by DBC-1. Mol. Endocrinol.
21: 1526-1536
[Abstract][Full Text]
Davis, L. M., Harris, C., Tang, L., Doherty, P., Hraber, P., Sakai, Y., Bocklage, T., Doeden, K., Hall, B., Alsobrook, J., Rabinowitz, I., Williams, T. M., Hozier, J.
(2007). Amplification Patterns of Three Genomic Regions Predict Distant Recurrence in Breast Carcinoma. J. Mol. Diagn.
9: 327-336
[Abstract][Full Text]
Kim, S. Y., Hahn, W. C.
(2007). Cancer genomics: integrating form and function. Carcinogenesis
28: 1387-1392
[Abstract][Full Text]
Mullins, M., Perreard, L., Quackenbush, J. F., Gauthier, N., Bayer, S., Ellis, M., Parker, J., Perou, C. M., Szabo, A., Bernard, P. S.
(2007). Agreement in Breast Cancer Classification between Microarray and Quantitative Reverse Transcription PCR from Fresh-Frozen and Formalin-Fixed, Paraffin-Embedded Tissues. Clin. Chem.
53: 1273-1279
[Abstract][Full Text]
Dyrskjot, L., Zieger, K., Real, F. X., Malats, N., Carrato, A., Hurst, C., Kotwal, S., Knowles, M., Malmstrom, P.-U., de la Torre, M., Wester, K., Allory, Y., Vordos, D., Caillault, A., Radvanyi, F., Hein, A.-M. K., Jensen, J. L., Jensen, K. M.E., Marcussen, N., Orntoft, T. F.
(2007). Gene Expression Signatures Predict Outcome in Non-Muscle-Invasive Bladder Carcinoma: A Multicenter Validation Study. Clin. Cancer Res.
13: 3545-3551
[Abstract][Full Text]
Punglia, R. S., Morrow, M., Winer, E. P., Harris, J. R.
(2007). Local Therapy and Survival in Breast Cancer. NEJM
356: 2399-2405
[Full Text]
O'Dwyer, P. J., Eckhardt, S. G., Haller, D. G., Tepper, J., Ahnen, D., Hamilton, S., Benson, A. B. III, Rothenberg, M., Petrelli, N., Lenz, H.-J., Diasio, R., DuBois, R., Sargent, D., Sloan, J., Johnson, C. D., Comis, R. L., O'Connell, M. J.
(2007). Priorities in Colorectal Cancer Research: Recommendations From the Gastrointestinal Scientific Leadership Council of the Coalition of Cancer Cooperative Groups. JCO
25: 2313-2321
[Abstract][Full Text]
Desmedt, C., Piette, F., Loi, S., Wang, Y., Lallemand, F., Haibe-Kains, B., Viale, G., Delorenzi, M., Zhang, Y., d'Assignies, M. S., Bergh, J., Lidereau, R., Ellis, P., Harris, A. L., Klijn, J. G.M., Foekens, J. A., Cardoso, F., Piccart, M. J., Buyse, M., Sotiriou, C., on behalf of the TRANSBIG Consortium,
(2007). Strong Time Dependence of the 76-Gene Prognostic Signature for Node-Negative Breast Cancer Patients in the TRANSBIG Multicenter Independent Validation Series. Clin. Cancer Res.
13: 3207-3214
[Abstract][Full Text]
Cronin, M., Sangli, C., Liu, M.-L., Pho, M., Dutta, D., Nguyen, A., Jeong, J., Wu, J., Langone, K. C., Watson, D.
(2007). Analytical Validation of the Oncotype DX Genomic Diagnostic Test for Recurrence Prognosis and Therapeutic Response Prediction in Node-Negative, Estrogen Receptor-Positive Breast Cancer. Clin. Chem.
53: 1084-1091
[Abstract][Full Text]
Stafford, P., Brun, M.
(2007). Three methods for optimization of cross-laboratory and cross-platform microarray expression data. Nucleic Acids Res
35: e72-e72
[Abstract][Full Text]
Abba, M. C., Fabris, V. T., Hu, Y., Kittrell, F. S., Cai, W.-W., Donehower, L. A., Sahin, A., Medina, D., Aldaz, C. M.
(2007). Identification of Novel Amplification Gene Targets in Mouse and Human Breast Cancer at a Syntenic Cluster Mapping to Mouse ch8A1 and Human ch13q34. Cancer Res.
67: 4104-4112
[Abstract][Full Text]
Saal, L. H., Johansson, P., Holm, K., Gruvberger-Saal, S. K., She, Q.-B., Maurer, M., Koujak, S., Ferrando, A. A., Malmstrom, P., Memeo, L., Isola, J., Bendahl, P.-O., Rosen, N., Hibshoosh, H., Ringner, M., Borg, A., Parsons, R.
(2007). Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity. Proc. Natl. Acad. Sci. USA
104: 7564-7569
[Abstract][Full Text]
Welm, A. L., Sneddon, J. B., Taylor, C., Nuyten, D. S. A., van de Vijver, M. J., Hasegawa, B. H., Bishop, J. M.
(2007). The macrophage-stimulating protein pathway promotes metastasis in a mouse model for breast cancer and predicts poor prognosis in humans. Proc. Natl. Acad. Sci. USA
104: 7570-7575
[Abstract][Full Text]
Minn, A. J., Gupta, G. P., Padua, D., Bos, P., Nguyen, D. X., Nuyten, D., Kreike, B., Zhang, Y., Wang, Y., Ishwaran, H., Foekens, J. A., van de Vijver, M., Massague, J.
(2007). Lung metastasis genes couple breast tumor size and metastatic spread. Proc. Natl. Acad. Sci. USA
104: 6740-6745
[Abstract][Full Text]
Nicolau, M., Tibshirani, R., Borresen-Dale, A.-L., Jeffrey, S. S.
(2007). Disease-specific genomic analysis: identifying the signature of pathologic biology. Bioinformatics
23: 957-965
[Abstract][Full Text]
Loi, S., Haibe-Kains, B., Desmedt, C., Lallemand, F., Tutt, A. M., Gillet, C., Ellis, P., Harris, A., Bergh, J., Foekens, J. A., Klijn, J. G.M., Larsimont, D., Buyse, M., Bontempi, G., Delorenzi, M., Piccart, M. J., Sotiriou, C.
(2007). Definition of Clinically Distinct Molecular Subtypes in Estrogen Receptor-Positive Breast Carcinomas Through Genomic Grade. JCO
25: 1239-1246
[Abstract][Full Text]
Winter, S. C., Buffa, F. M., Silva, P., Miller, C., Valentine, H. R., Turley, H., Shah, K. A., Cox, G. J., Corbridge, R. J., Homer, J. J., Musgrove, B., Slevin, N., Sloan, P., Price, P., West, C. M.L., Harris, A. L.
(2007). Relation of a Hypoxia Metagene Derived from Head and Neck Cancer to Prognosis of Multiple Cancers. Cancer Res.
67: 3441-3449
[Abstract][Full Text]
Ma, Y., Qian, Y., Wei, L., Abraham, J., Shi, X., Castranova, V., Harner, E. J., Flynn, D. C., Guo, L.
(2007). Population-Based Molecular Prognosis of Breast Cancer by Transcriptional Profiling. Clin. Cancer Res.
13: 2014-2022
[Abstract][Full Text]
Ioannidis, J. P. A.
(2007). Is Molecular Profiling Ready for Use in Clinical Decision Making?. The Oncologist
12: 301-311
[Abstract][Full Text]
Ramilo, O., Allman, W., Chung, W., Mejias, A., Ardura, M., Glaser, C., Wittkowski, K. M., Piqueras, B., Banchereau, J., Palucka, A. K., Chaussabel, D.
(2007). Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood
109: 2066-2077
[Abstract][Full Text]
Price, N. D., Trent, J., El-Naggar, A. K., Cogdell, D., Taylor, E., Hunt, K. K., Pollock, R. E., Hood, L., Shmulevich, I., Zhang, W.
(2007). Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. Proc. Natl. Acad. Sci. USA
104: 3414-3419
[Abstract][Full Text]
Cavanna, T., Pokorna, E., Vesely, P., Gray, C., Zicha, D.
(2007). Evidence for protein 4.1B acting as a metastasis suppressor. J. Cell Sci.
120: 606-616
[Abstract][Full Text]
Rody, A., Holtrich, U., Gaetje, R., Gehrmann, M., Engels, K., von Minckwitz, G., Loibl, S., Diallo-Danebrock, R., Ruckhaberle, E., Metzler, D., Ahr, A., Solbach, C., Karn, T., Kaufmann, M.
(2007). Poor Outcome in Estrogen Receptor-Positive Breast Cancers Predicted by Loss of Plexin B1. Clin. Cancer Res.
13: 1115-1122
[Abstract][Full Text]
Glas, A. M., Knoops, L., Delahaye, L., Kersten, M. J., Kibbelaar, R. E., Wessels, L. A., van Laar, R., van Krieken, J. H. J.M., Baars, J. W., Raemaekers, J., Kluin, P. M., van 't Veer, L. J., de Jong, D.
(2007). Gene-Expression and Immunohistochemical Study of Specific T-Cell Subsets and Accessory Cell Types in the Transformation and Prognosis of Follicular Lymphoma. JCO
25: 390-398
[Abstract][Full Text]
Lillie, S. E., Brewer, N. T., O'Neill, S. C., Morrill, E. F., Dees, E. C., Carey, L. A., Rimer, B. K.
(2007). Retention and Use of Breast Cancer Recurrence Risk Information from Genomic Tests: The Role of Health Literacy. Cancer Epidemiol. Biomarkers Prev.
16: 249-255
[Abstract][Full Text]
Aivado, M., Spentzos, D., Germing, U., Alterovitz, G., Meng, X.-Y., Grall, F., Giagounidis, A. A. N., Klement, G., Steidl, U., Otu, H. H., Czibere, A., Prall, W. C., Iking-Konert, C., Shayne, M., Ramoni, M. F., Gattermann, N., Haas, R., Mitsiades, C. S., Fung, E. T., Libermann, T. A.
(2007). From the cover: Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease. Proc. Natl. Acad. Sci. USA
104: 1307-1312
[Abstract][Full Text]
Liu, R., Wang, X., Chen, G. Y., Dalerba, P., Gurney, A., Hoey, T., Sherlock, G., Lewicki, J., Shedden, K., Clarke, M. F.
(2007). The Prognostic Role of a Gene Signature from Tumorigenic Breast-Cancer Cells. NEJM
356: 217-226
[Abstract][Full Text]
Massague, J.
(2007). Sorting Out Breast-Cancer Gene Signatures. NEJM
356: 294-297
[Full Text]
Dowsett, M., Smith, I. E., Ebbs, S. R., Dixon, J. M., Skene, A., A'Hern, R., Salter, J., Detre, S., Hills, M., Walsh, G.
(2007). Prognostic Value of Ki67 Expression After Short-Term Presurgical Endocrine Therapy for Primary Breast Cancer. JNCI J Natl Cancer Inst
99: 167-170
[Abstract][Full Text]
Climent, J., Dimitrow, P., Fridlyand, J., Palacios, J., Siebert, R., Albertson, D. G., Gray, J. W., Pinkel, D., Lluch, A., Martinez-Climent, J. A.
(2007). Deletion of Chromosome 11q Predicts Response to Anthracycline-Based Chemotherapy in Early Breast Cancer. Cancer Res.
67: 818-826
[Abstract][Full Text]
Diallo-Danebrock, R., Ting, E., Gluz, O., Herr, A., Mohrmann, S., Geddert, H., Rody, A., Schaefer, K.-L., Baldus, S. E., Hartmann, A., Wild, P. J., Burson, M., Gabbert, H. E., Nitz, U., Poremba, C.
(2007). Protein Expression Profiling in High-Risk Breast Cancer Patients Treated with High-Dose or Conventional Dose-Dense Chemotherapy. Clin. Cancer Res.
13: 488-497
[Abstract][Full Text]
Hsu, J. C., Chang, J., Wang, T., Steingrimsson, E., Magnusson, M. K., Bergsteinsdottir, K.
(2007). Statistically designing microarrays and microarray experiments to enhance sensitivity and specificity. Brief Bioinform
8: 22-31
[Abstract][Full Text]
Wurfel, M. M.
(2007). Microarray-based Analysis of Ventilator-induced Lung Injury. Proc Am Thorac Soc
4: 77-84
[Abstract][Full Text]
Sun, Y., Goodison, S., Li, J., Liu, L., Farmerie, W.
(2007). Improved breast cancer prognosis through the combination of clinical and genetic markers. Bioinformatics
23: 30-37
[Abstract][Full Text]
Schatzkin, A.
(2007). Can Biomarkers Help Us Understand the Nutritional and Lifestyle Factors Important in Cancer Prognosis?. J. Nutr.
137: 249S-252S
[Abstract][Full Text]