Detection of APC Mutations in Fecal DNA from Patients with Colorectal Tumors
Giovanni Traverso, B.A., Anthony Shuber, M.S., Bernard Levin, M.D., Constance Johnson, R.N., M.S., Louise Olsson, M.D., David J. Schoetz, Jr., M.D., Stanley R. Hamilton, M.D., Kevin Boynton, B.S., Kenneth W. Kinzler, Ph.D., and Bert Vogelstein, M.D.
Background Noninvasive methods for detecting colorectal tumorshave the potential to reduce morbidity and mortality from thisdisease. The mutations in the adenomatous polyposis coli (APC)gene that initiate colorectal tumors theoretically provide anoptimal marker for detecting colorectal tumors. The purposeof our study was to determine the feasibility of detecting APCmutations in fecal DNA with the use of newly developed methods.
Methods We purified DNA from routinely collected stool samplesand screened for APC mutations with the use of a novel approachcalled digital protein truncation. Many different mutationscould potentially be identified in a sensitive and specificmanner with this technique.
Results Stool samples from 28 patients with nonmetastatic colorectalcancers, 18 patients with adenomas that were at least 1 cm indiameter, and 28 control patients without neoplastic diseasewere studied. APC mutations were identified in 26 of the 46patients with neoplasia (57 percent; 95 percent confidence interval,41 to 71 percent) and in none of the 28 control patients (0percent; 95 percent confidence interval, 0 to 12 percent; P<0.001).In the patients with positive tests, mutant APC genes made up0.4 to 14.1 percent of all APC genes in the stool.
Conclusions APC mutations can be detected in fecal DNA frompatients with relatively early colorectal tumors. This feasibilitystudy suggests a new approach for the early detection of colorectalneoplasms.
Source Information
From the Graduate Program in Human Genetics (G.T.), Howard Hughes Medical Institute (B.V.), and the Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins (G.T., K.W.K., B.V.), Johns Hopkins School of Medicine, Baltimore; Exact Sciences, Maynard, Mass. (A.S., K.B.); the Division of Cancer Prevention (B.L.), the Department of Epidemiology (C.J.), and the Division of Pathology and Laboratory Medicine (S.R.H.), University of Texas M.D. Anderson Cancer Center, Houston; the Department of Surgery, Central Hospital, Västerås, Center for Clinical Research, Uppsala University, Uppsala, Sweden (L.O.); and the Department of Colon-Rectal Surgery, Lahey Clinic, Burlington, Mass. (D.J.S.).
Address reprint requests to Dr. Vogelstein at the Sidney Kimmel Comprehensive Cancer Center, 1650 Orleans St., Baltimore, MD 21231, or at vogelbe{at}welch.jhu.edu.
Hellebrekers, D. M.E.I., Lentjes, M. H.F.M., van den Bosch, S. M., Melotte, V., Wouters, K. A.D., Daenen, K. L.J., Smits, K. M., Akiyama, Y., Yuasa, Y., Sanduleanu, S., Khalid-de Bakker, C. A.J., Jonkers, D., Weijenberg, M. P., Louwagie, J., van Criekinge, W., Carvalho, B., Meijer, G. A., Baylin, S. B., Herman, J. G., de Bruine, A. P., van Engeland, M.
(2009). GATA4 and GATA5 are Potential Tumor Suppressors and Biomarkers in Colorectal Cancer. Clin. Cancer Res.
15: 3990-3997
[Abstract][Full Text]
Takai, T., Kanaoka, S., Yoshida, K.-i., Hamaya, Y., Ikuma, M., Miura, N., Sugimura, H., Kajimura, M., Hishida, A.
(2009). Fecal Cyclooxygenase 2 Plus Matrix Metalloproteinase 7 mRNA Assays as a Marker for Colorectal Cancer Screening. Cancer Epidemiol. Biomarkers Prev.
18: 1888-1893
[Abstract][Full Text]
Koga, Y., Yasunaga, M., Moriya, Y., Akasu, T., Fujita, S., Yamamoto, S., Baba, H., Matsumura, Y.
(2009). Detection of the DNA Point Mutation of Colorectal Cancer Cells Isolated from Feces Stored Under Different Conditions. Jpn J Clin Oncol
39: 62-69
[Abstract][Full Text]
Ahlquist, D. A., Sargent, D. J., Loprinzi, C. L., Levin, T. R., Rex, D. K., Ahnen, D. J., Knigge, K., Lance, M. P., Burgart, L. J., Hamilton, S. R., Allison, J. E., Lawson, M. J., Devens, M. E., Harrington, J. J., Hillman, S. L.
(2008). Stool DNA and Occult Blood Testing for Screen Detection of Colorectal Neoplasia. ANN INTERN MED
149: 441-450
[Abstract][Full Text]
Velculescu, V. E.
(2008). Defining the blueprint of the cancer genome. Carcinogenesis
29: 1087-1091
[Abstract][Full Text]
Zou, H., Harrington, J., Rego, R. L., Ahlquist, D. A.
(2007). A Novel Method to Capture Methylated Human DNA from Stool: Implications for Colorectal Cancer Screening. Clin. Chem.
53: 1646-1651
[Abstract][Full Text]
Mathers, J. C., Hesketh, J. E.
(2007). The Biological Revolution: Understanding the Impact of SNPs on Diet-Cancer Interrelationships. J. Nutr.
137: 253S-258S
[Abstract][Full Text]
Levin, B.
(2006). Molecular Screening Testing for Colorectal Cancer. Clin. Cancer Res.
12: 5014-5017
[Full Text]
Zou, H., Harrington, J. J., Klatt, K. K., Ahlquist, D. A.
(2006). A sensitive method to quantify human long DNA in stool: relevance to colorectal cancer screening.. Cancer Epidemiol. Biomarkers Prev.
15: 1115-1119
[Abstract][Full Text]
Sun, X., Liu, Y., Lutterbaugh, J., Chen, W.-D., Markowitz, S. D., Guo, B.
(2006). Detection of Mononucleotide Repeat Sequence Alterations in a Large Background of Normal DNA for Screening High-Frequency Microsatellite Instability Cancers. Clin. Cancer Res.
12: 454-459
[Abstract][Full Text]
Chen, W.-D., Han, Z. J., Skoletsky, J., Olson, J., Sah, J., Myeroff, L., Platzer, P., Lu, S., Dawson, D., Willis, J., Pretlow, T. P., Lutterbaugh, J., Kasturi, L., Willson, J. K. V., Rao, J. S., Shuber, A., Markowitz, S. D.
(2005). Detection in Fecal DNA of Colon Cancer-Specific Methylation of the Nonexpressed Vimentin Gene. JNCI J Natl Cancer Inst
97: 1124-1132
[Abstract][Full Text]
Jardine, V L, Sala, E, Lomas, D J
(2005). MR colonography: baseline appearance of the unprepared rectosigmoid. Br. J. Radiol.
78: 202-206
[Abstract][Full Text]
Petko, Z., Ghiassi, M., Shuber, A., Gorham, J., Smalley, W., Washington, M. K., Schultenover, S., Gautam, S., Markowitz, S. D., Grady, W. M.
(2005). Aberrantly Methylated CDKN2A, MGMT, and MLH1 in Colon Polyps and in Fecal DNA from Patients with Colorectal Polyps. Clin. Cancer Res.
11: 1203-1209
[Abstract][Full Text]
Lippman, S. M., Levin, B.
(2005). Cancer Prevention: Strong Science and Real Medicine. JCO
23: 249-253
[Full Text]
Hawk, E. T., Levin, B.
(2005). Colorectal Cancer Prevention. JCO
23: 378-391
[Abstract][Full Text]
Imperiale, T. F., Ransohoff, D. F., Itzkowitz, S. H., Turnbull, B. A., Ross, M. E., the Colorectal Cancer Study Group,
(2004). Fecal DNA versus Fecal Occult Blood for Colorectal-Cancer Screening in an Average-Risk Population. NEJM
351: 2704-2714
[Abstract][Full Text]
Whitney, D., Skoletsky, J., Moore, K., Boynton, K., Kann, L., Brand, R., Syngal, S., Lawson, M., Shuber, A.
(2004). Enhanced Retrieval of DNA from Human Fecal Samples Results in Improved Performance of Colorectal Cancer Screening Test. J. Mol. Diagn.
6: 386-395
[Abstract][Full Text]
Leung, W. K., To, K.-F., Man, E. P.S., Chan, M. W.Y., Bai, A. H.C., Hui, A. J., Chan, F. K.L., Lee, J. F.Y., Sung, J. J. Y.
(2004). Detection of Epigenetic Changes in Fecal DNA as a Molecular Screening Test for Colorectal Cancer: A Feasibility Study. Clin. Chem.
50: 2179-2182
[Full Text]
Pincas, H., Pingle, M. R., Huang, J., Lao, K., Paty, P. B., Friedman, A. M., Barany, F.
(2004). High sensitivity EndoV mutation scanning through real-time ligase proofreading. Nucleic Acids Res
32: e148-e148
[Abstract][Full Text]
Khoury, M. J, Millikan, R., Little, J., Gwinn, M.
(2004). The emergence of epidemiology in the genomics age. Int J Epidemiol
33: 936-944
[Full Text]
Belshaw, N. J., Elliott, G. O., Williams, E. A., Bradburn, D. M., Mills, S. J., Mathers, J. C., Johnson, I. T.
(2004). Use of DNA from Human Stools to Detect Aberrant CpG Island Methylation of Genes Implicated in Colorectal Cancer. Cancer Epidemiol. Biomarkers Prev.
13: 1495-1501
[Abstract][Full Text]
Wong, S C C, Lo, E S F, Cheung, M T
(2004). An optimised protocol for the extraction of non-viral mRNA from human plasma frozen for three years. J. Clin. Pathol.
57: 766-768
[Abstract][Full Text]
Maitra, A., Cohen, Y., Gillespie, S. E.D., Mambo, E., Fukushima, N., Hoque, M. O., Shah, N., Goggins, M., Califano, J., Sidransky, D., Chakravarti, A.
(2004). The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection. Genome Res
14: 812-819
[Abstract][Full Text]
Hasan, R. K., Wulfkuhle, J. D., Liotta, L. A., Petricoin, E. F
(2004). Molecular Technologies for Personalized Cancer Management. JAMA
291: 1644-1645
[Full Text]
Sabichi, A. L., Demierre, M.-F., Hawk, E. T., Lerman, C. E., Lippman, S. M.
(2003). Frontiers in Cancer Prevention Research. Cancer Res.
63: 5649-5655
[Full Text]
Schoen, R. E., Pinsky, P. F., Weissfeld, J. L., Bresalier, R. S., Church, T., Prorok, P., Gohagan, J. K.
(2003). Results of Repeat Sigmoidoscopy 3 Years After a Negative Examination. JAMA
290: 41-48
[Abstract][Full Text]
Delude, C.
(2003). Genetic Research: Mining for Medical Treasures. FASEB J.
17: 787e-787
[Full Text]
Ferenci, P
(2003). How to identify the genetic basis of gastrointestinal and liver diseases?. Gut
52: ii6-9
[Abstract][Full Text]
Walsh, J. M. E., Terdiman, J. P.
(2003). Colorectal Cancer Screening: Scientific Review. JAMA
289: 1288-1296
[Abstract][Full Text]
Macafee, D A L, Scholefield, J H
(2003). Population based endoscopic screening for colorectal cancer. Gut
52: 323-326
[Full Text]
Araki, Y., Okamura, S., Hussain, S. P., Nagashima, M., He, P., Shiseki, M., Miura, K., Harris, C. C.
(2003). Regulation of Cyclooxygenase-2 Expression by the Wnt and Ras Pathways. Cancer Res.
63: 728-734
[Abstract][Full Text]
Frattini, M., Balestra, D., Pilotti, S., Bertario, L., Pierotti, M. A.
(2003). Tumor Location and Detection of K-Ras Mutations in Stool From Colorectal Cancer Patients. JNCI J Natl Cancer Inst
95: 72-73
[Full Text]
Jen, J., Vogelstein, B.
(2003). RESPONSE: Tumor Location and Detection of K-Ras Mutations in Stool From Colorectal Cancer Patients. JNCI J Natl Cancer Inst
95: 73-73
[Full Text]
Levin, B., Brooks, D., Smith, R. A., Stone, A.
(2003). Emerging Technologies in Screening for Colorectal Cancer: CT Colonography, Immunochemical Fecal Occult Blood Tests, and Stool Screening Using Molecular Markers. CA Cancer J Clin
53: 44-55
[Abstract][Full Text]
Moayyedi, P., Ford, A.
(2002). Recent developments in gastroenterology. BMJ
325: 1399-1402
[Full Text]
Lippman, S. M., Hong, W. K.
(2002). Cancer Prevention Science and Practice. Cancer Res.
62: 5119-5125
[Full Text]
Ransohoff, D. F., Traverso, G., Kinzler, K. W., Vogelstein, B.
(2002). Fecal DNA Tests for Colorectal Cancer. NEJM
346: 1912-1913
[Full Text]
Toyooka, S., Toyooka, K. O., Harada, K., Miyajima, K., Makarla, P., Sathyanarayana, U. G., Yin, J., Sato, F., Shivapurkar, N., Meltzer, S. J., Gazdar, A. F.
(2002). Aberrant Methylation of the CDH13 (H-cadherin) Promoter Region in Colorectal Cancers and Adenomas. Cancer Res.
62: 3382-3386
[Abstract][Full Text]
(2002). More on Stool DNA Tests for Colorectal Cancer and Adenomas. JWatch Gastroenterology
2002: 1-1
[Full Text]
(2002). New Fecal Test for Colorectal Tumors. JWatch General
2002: 1-1
[Full Text]